Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis.
Abstract
[BACKGROUND] Hidradenitis suppurativa (HS) is a recurrent inflammatory disease of the apocrine sweat glands. Immune dysregulation probably contributes to the pathogenesis of HS.
[AIM] To harness mRNA expression arrays to investigate the transcriptome profile in HS compared with control skin.
[METHODS] Illumina HumanHT-12 v4 Expression BeadChips were used to measure mRNA expression in skin samples from HS (n = 10) and abdominoplasty (n = 11) skin specimens. Differentially expressed genes were detected by fitting genewise linear models to the normalized expression data and then modelling using the web-based software Ingenuity Pathway Analysis.
[RESULTS] The antimicrobial peptide Dermcidin and the cytokine regulator interleukin (IL)-37 were both significantly downregulated in the HS specimens (Dermcidin expression log ratio -3.93, expression P = 0.04; IL-37 expression log ratio -3.29, expression P < 0.001). Pathway analysis revealed the interferon-signalling pathway, leucocyte extravasation pathway, T helper 1 and 2 pathways and nuclear factor of activated T cells as the top-five upregulated pathways in the HS samples.
[CONCLUSION] Evaluation of transcriptome patterns in HS compared with normal skin demonstrated downregulation of the antimicrobial peptide Dermcidin and the innate immune regulator IL-37, as well as upregulation of interferon pathways and pathways of leucocyte activation.
[AIM] To harness mRNA expression arrays to investigate the transcriptome profile in HS compared with control skin.
[METHODS] Illumina HumanHT-12 v4 Expression BeadChips were used to measure mRNA expression in skin samples from HS (n = 10) and abdominoplasty (n = 11) skin specimens. Differentially expressed genes were detected by fitting genewise linear models to the normalized expression data and then modelling using the web-based software Ingenuity Pathway Analysis.
[RESULTS] The antimicrobial peptide Dermcidin and the cytokine regulator interleukin (IL)-37 were both significantly downregulated in the HS specimens (Dermcidin expression log ratio -3.93, expression P = 0.04; IL-37 expression log ratio -3.29, expression P < 0.001). Pathway analysis revealed the interferon-signalling pathway, leucocyte extravasation pathway, T helper 1 and 2 pathways and nuclear factor of activated T cells as the top-five upregulated pathways in the HS samples.
[CONCLUSION] Evaluation of transcriptome patterns in HS compared with normal skin demonstrated downregulation of the antimicrobial peptide Dermcidin and the innate immune regulator IL-37, as well as upregulation of interferon pathways and pathways of leucocyte activation.
추출된 의학 개체 (NER)
| 유형 | 영어 표현 | 한국어 / 풀이 | UMLS CUI | 출처 | 등장 |
|---|---|---|---|---|---|
| 시술 | abdominoplasty
|
복부성형술 | dict | 1 | |
| 해부 | skin
|
scispacy | 1 | ||
| 해부 | leucocyte
|
scispacy | 1 | ||
| 해부 | nuclear
|
scispacy | 1 | ||
| 해부 | T cells
|
scispacy | 1 | ||
| 합병증 | hidradenitis suppurativa
|
scispacy | 1 | ||
| 약물 | [BACKGROUND] Hidradenitis suppurativa
|
scispacy | 1 | ||
| 약물 | interferon
|
scispacy | 1 | ||
| 질환 | hidradenitis suppurativa
|
C0162836
Hidradenitis Suppurativa
|
scispacy | 1 | |
| 질환 | disease
|
scispacy | 1 | ||
| 질환 | samples
|
scispacy | 1 | ||
| 기타 | interferon
|
scispacy | 1 | ||
| 기타 | apocrine sweat glands
|
scispacy | 1 | ||
| 기타 | interleukin
|
scispacy | 1 | ||
| 기타 | IL-37
|
scispacy | 1 | ||
| 기타 | interferon-signalling
|
scispacy | 1 | ||
| 기타 | T helper 1
|
scispacy | 1 |
MeSH Terms
Adult; Case-Control Studies; Female; Hidradenitis Suppurativa; Humans; Interferons; Interleukin-1; Leukocytes; Linear Models; Male; Metabolic Networks and Pathways; Oligonucleotide Array Sequence Analysis; Peptides; RNA, Messenger; Reference Values; Signal Transduction; Skin; Transcriptome
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