as a potential pan-cancer diagnostic, prognostic, and immunological biomarker.

Translational cancer research 2024 Vol.13(3) p. 1533-1553

Tao L, Xu X, Fang Z, Christopoulos P, Cortinovis D, Lu Y

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Abstract

[BACKGROUND] Ras-related C3 botulinum toxin substrate 1 () is an important member of the Rho GTPase family involved in tumorigenesis. However, its role and potential clinical utility across cancer entities in solid tumors is unknown.

[METHODS] We analyzed data from various databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project, cBioPortal, Tumor Immune Estimation Resource 2 (TIMER2), and published articles. A prognostic nomogram for liver hepatocellular carcinoma (LIHC) patients was developed based on RAC1-guanosine triphosphate (GTP) gene expression levels, which were validated using immunohistochemistry (IHC).

[RESULTS] In this study, was highly expressed in most cancers and correlated with prognosis and pathological stages. Furthermore, significant associations were observed between and DNA methylation, immune cell infiltration, immune-related genes, tumor mutational burden, and microsatellite instability in most tumors. As a use case, we employed gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) to analyze the biologic importance of expression and established a prognostic nomogram based on tumor stage and expression, which can better predict the overall survival rate of patients with LIHC better than tumor stage alone. The gene expression results were validated with IHC, which confirmed a higher expression of the RAC1-GTP protein in LIHC compared to paracancerous tissues.

[CONCLUSIONS] This extensive solid tumor analysis provides sound evidence that can serve as both as an immunotherapy target and as a diagnostic and prognostic biomarker.

추출된 의학 개체 (NER)

유형영어 표현한국어 / 풀이UMLS CUI출처등장
시술 botulinum toxin 보툴리눔독소 주사 dict 1
해부 DNA scispacy 1
해부 immune cell scispacy 1
약물 LIHC → liver hepatocellular carcinoma C2239176
Liver carcinoma
scispacy 1
약물 RAC1-guanosine triphosphate scispacy 1
약물 GTP → RAC1-guanosine triphosphate scispacy 1
약물 [BACKGROUND] Ras-related C3 botulinum toxin substrate 1 ( scispacy 1
약물 [RESULTS] scispacy 1
약물 [CONCLUSIONS] scispacy 1
질환 cancer C0006826
Malignant Neoplasms
scispacy 1
질환 tumors C0027651
Neoplasms
scispacy 1
질환 TCGA → The Cancer Genome Atlas C3273927
The Cancer Genome Atlas
scispacy 1
질환 Tumor C0027651
Neoplasms
scispacy 1
질환 liver hepatocellular carcinoma C2239176
Liver carcinoma
scispacy 1
질환 cancers C0006826
Malignant Neoplasms
scispacy 1
질환 solid tumors scispacy 1
질환 Tumor Immune scispacy 1
질환 LIHC → liver hepatocellular carcinoma scispacy 1
질환 paracancerous tissues scispacy 1
질환 solid tumor scispacy 1
기타 Rho scispacy 1
기타 patients scispacy 1

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