as a potential pan-cancer diagnostic, prognostic, and immunological biomarker.
Abstract
[BACKGROUND] Ras-related C3 botulinum toxin substrate 1 () is an important member of the Rho GTPase family involved in tumorigenesis. However, its role and potential clinical utility across cancer entities in solid tumors is unknown.
[METHODS] We analyzed data from various databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project, cBioPortal, Tumor Immune Estimation Resource 2 (TIMER2), and published articles. A prognostic nomogram for liver hepatocellular carcinoma (LIHC) patients was developed based on RAC1-guanosine triphosphate (GTP) gene expression levels, which were validated using immunohistochemistry (IHC).
[RESULTS] In this study, was highly expressed in most cancers and correlated with prognosis and pathological stages. Furthermore, significant associations were observed between and DNA methylation, immune cell infiltration, immune-related genes, tumor mutational burden, and microsatellite instability in most tumors. As a use case, we employed gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) to analyze the biologic importance of expression and established a prognostic nomogram based on tumor stage and expression, which can better predict the overall survival rate of patients with LIHC better than tumor stage alone. The gene expression results were validated with IHC, which confirmed a higher expression of the RAC1-GTP protein in LIHC compared to paracancerous tissues.
[CONCLUSIONS] This extensive solid tumor analysis provides sound evidence that can serve as both as an immunotherapy target and as a diagnostic and prognostic biomarker.
[METHODS] We analyzed data from various databases, including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project, cBioPortal, Tumor Immune Estimation Resource 2 (TIMER2), and published articles. A prognostic nomogram for liver hepatocellular carcinoma (LIHC) patients was developed based on RAC1-guanosine triphosphate (GTP) gene expression levels, which were validated using immunohistochemistry (IHC).
[RESULTS] In this study, was highly expressed in most cancers and correlated with prognosis and pathological stages. Furthermore, significant associations were observed between and DNA methylation, immune cell infiltration, immune-related genes, tumor mutational burden, and microsatellite instability in most tumors. As a use case, we employed gene set enrichment analysis (GSEA) and gene set variation analysis (GSVA) to analyze the biologic importance of expression and established a prognostic nomogram based on tumor stage and expression, which can better predict the overall survival rate of patients with LIHC better than tumor stage alone. The gene expression results were validated with IHC, which confirmed a higher expression of the RAC1-GTP protein in LIHC compared to paracancerous tissues.
[CONCLUSIONS] This extensive solid tumor analysis provides sound evidence that can serve as both as an immunotherapy target and as a diagnostic and prognostic biomarker.
추출된 의학 개체 (NER)
| 유형 | 영어 표현 | 한국어 / 풀이 | UMLS CUI | 출처 | 등장 |
|---|---|---|---|---|---|
| 시술 | botulinum toxin
|
보툴리눔독소 주사 | dict | 1 | |
| 해부 | DNA
|
scispacy | 1 | ||
| 해부 | immune cell
|
scispacy | 1 | ||
| 약물 | LIHC
→ liver hepatocellular carcinoma
|
C2239176
Liver carcinoma
|
scispacy | 1 | |
| 약물 | RAC1-guanosine triphosphate
|
scispacy | 1 | ||
| 약물 | GTP
→ RAC1-guanosine triphosphate
|
scispacy | 1 | ||
| 약물 | [BACKGROUND] Ras-related C3 botulinum toxin substrate 1 (
|
scispacy | 1 | ||
| 약물 | [RESULTS]
|
scispacy | 1 | ||
| 약물 | [CONCLUSIONS]
|
scispacy | 1 | ||
| 질환 | cancer
|
C0006826
Malignant Neoplasms
|
scispacy | 1 | |
| 질환 | tumors
|
C0027651
Neoplasms
|
scispacy | 1 | |
| 질환 | TCGA
→ The Cancer Genome Atlas
|
C3273927
The Cancer Genome Atlas
|
scispacy | 1 | |
| 질환 | Tumor
|
C0027651
Neoplasms
|
scispacy | 1 | |
| 질환 | liver hepatocellular carcinoma
|
C2239176
Liver carcinoma
|
scispacy | 1 | |
| 질환 | cancers
|
C0006826
Malignant Neoplasms
|
scispacy | 1 | |
| 질환 | solid tumors
|
scispacy | 1 | ||
| 질환 | Tumor Immune
|
scispacy | 1 | ||
| 질환 | LIHC
→ liver hepatocellular carcinoma
|
scispacy | 1 | ||
| 질환 | paracancerous tissues
|
scispacy | 1 | ||
| 질환 | solid tumor
|
scispacy | 1 | ||
| 기타 | Rho
|
scispacy | 1 | ||
| 기타 | patients
|
scispacy | 1 |
🔗 함께 등장하는 도메인
이 논문이 속한 카테고리와 같은 논문에서 자주 함께 다뤄지는 카테고리들
관련 논문
- Local therapeutic strategies for neurocutaneous dysesthesia: from capsaicin to cannabinoids.
- Comparative efficacy of intralesional therapies for keloid scars: a network meta-analysis.
- Adverse neurological events following botulinum toxin type A: A case series of post-injection seizures and paralysis.
- Decreased utilization of component separation techniques over time in complex abdominal wall reconstruction following introduction of preoperative botulinum toxin A.
- Current Perspectives on Pectoralis Minor Syndrome: A Narrative Review.